Ok slashdotters, I've had no luck getting this question answered elsewhere so I might as well try here. My son is very interested in coding. He's competent in Java and he's picking up c quite well. He's taken an interest in GPU programming and I know over the next year he will do OK with those concepts too (I've been able to get both OpenCL and CUDA code up and running). In other words, we've got the computer end of a sci fair project pretty well established. The problem is that while I know generally what bioinformatics is all about, I have no background or resources in the appropriate biology to help him find a worthy project.
Ideally, what he wants is 1) a bioinformatics problem with a large data set (yes I realize that is redundant by definition) 2) one that would benefit from GPU programming 3) a problem that makes some kind of physical testable prediction that could be tested.
Last year a kid (from Canada?) did a drug interaction study where he took candidate compounds and determined where on a protein they would attach. From that he found two compounds that could mate at the same time because their locations did not interfere. Thus increasing the effectivity. He actually clinically tested "his" drug on cells. Pretty impressive. I'm not expecting my son to reach that level but I'd like to find something real world and challenging that couples computer science with a physical biological process.
any input is greatly appreciated! gary.huntress@gmail.com
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